Faculty

Faculty Details


Faculty Details

  • Name: N. Prakash Prabhu
  • Mail: nppsluohyd.ac.in
  • Contact: 040-2313 4593
  • Area Of Research:Protein dynamics, folding and fibrillation: Spectroscopy and computational simulation

We are interested on the effect of osmolytes on protein structure, stability, and fibrillation propensity. We are also studying the effect of molecular crowding and confinement on the fibrillation of proteins. We are investigating these phenomena using spectroscopic and microscopic methods. We also employ computational modeling and dynamic simulation to understand the molecular mechanisms behind these effects.

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Students/Projects Trainees

Name Joined As Mail Contact
Pratibha Kushwaha PhD student --- ---
Archi Saurabh PhD student --- ---
Sanjay Kumar PhD student --- ---
Subhasree Ghosh PhD student --- ---
Muzafar Ahmad Naikoo PhD student --- ---

Former Students/Projects Trainees

Name Joined As Working
E. Kiran Kumar PhD (awarded)
Neshatul Haque PhD (awarded)
Bramhini Anumalla PhD (awarded)
K Tejaswi Naidu PhD (awarded)
35 Anumalla, Bramhini., Prabhu, N Prakash., (2020) , Surface hydration and preferential interaction directs the charged amino acids-induced changes in protein stability , Journal of Molecular Graphics and Modelling, Elsevier,,,107602.
34 Sharath, AK., Haque, Neshatul., Prabhu, N Prakash., (2020) , Spontaneous lid closure and substrate-induced lid opening dynamics of human pancreatic lipase-related protein 2: A computational study , Journal of Molecular Structure, Elsevier,,,128365.
33 Anumalla, Bramhini., Prabhu, N Prakash., (2019) , Counteracting Effect of Charged Amino Acids Against the Destabilization of Proteins by Arginine , Applied biochemistry and biotechnology, Springer US,189,2,541-555.
32 Potshangbam, Angamba Meetei., Polavarapu, Raja., Rathore, Ravindranath Singh., Naresh, Damuka., Prabhu, Nagu Prakash., Potshangbam, Nongdam., Kumar, Pravind., Vindal, Vaibhav., (2019) , Med PS erver: A database for identification of therapeutic targets and novel leads pertaining to natural products , Chemical biology & drug design, Wiley Online Library,93,4,438-446.
31 Anumalla, Bramhini., Prabhu, N Prakash., (2019) , Chain Compaction and Synergistic Destabilization of Globular Proteins by Mixture of Denaturants , ChemistrySelect, Wiley Online Library,4,47,13797-13801.
30 Singh DK, Lingaswamy B, Koduru TN, Nagu PP, Jogadhenu PSS., (2019) , A putative merR family transcription factor Slr0701 regulates mercury inducible expression of MerA in the cyanobacterium Synechocystis sp. PCC6803 , MicrobiologyOpen, John Wiley & Sons Ltd,8,,e838.
29 Bharadwaja Vadloori, A. K. Sharath, N. Prakash Prabhu, Radheshyam Maurya* (2018) , Homology modelling, molecular docking, and molecular dynamics simulations reveal the inhibition of Leishmania donovani dihydrofolate reductase-thymidylate synthase enzyme by Withaferin-A , BMC Research Notes, BMC Group,11,246,1-7 IF - 1.6.
28 Anumalla, Bramhini., Prabhu, N Prakash., (2018) , Glutamate induced thermal equilibrium intermediate and counteracting effect on chemical denaturation of proteins , The Journal of Physical Chemistry B, ACS Publications,122,3,1132-1144.
27 Vadloori, Bharadwaja., Sharath, AK., Prabhu, N Prakash., Maurya, Radheshyam., (2018) , Homology modelling, molecular docking, and molecular dynamics simulations reveal the inhibition of Leishmania donovani dihydrofolate reductase-thymidylate synthase enzyme by Withaferin-A , BMC research notes, BioMed Central,11,1,246.
26 Haque, Neshatul., Prabhu, N Prakash., (2018) , Binding orientation and interaction of bile salt in its ternary complex with pancreatic lipase-colipase system , Biochemical and biophysical research communications, Elsevier,499,4,907-912.
25 Kumar, E Kiran., Prasad, Deepak Kumar., Prabhu, N Prakash., (2017) , Concentration dependent switch in the kinetic pathway of lysozyme fibrillation: spectroscopic and microscopic analysis , Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, Elsevier,183,,187-194.
24 Haque, Neshatul., Baratam, Krishnakanth., Prabhu, N Prakash., (2017) , Analysing the microenvironment of 2-p-toluidinylnaphthalene-6-sulfonate (TNS) in solvents and in different conformational states of proteins in relation to its fluorescence properties: a computational study , Physical Chemistry Chemical Physics, Royal Society of Chemistry,19,36,24656-24666.
23 Kumar, E Kiran., Haque, Neshatul., Prabhu, N Prakash., (2017) , Kinetics of protein fibril formation: Methods and mechanisms , International journal of biological macromolecules, Elsevier,100,,3-10.
22 Meetei, Potshangbam Angamba., Rathore, RS., Prabhu, N Prakash., Vindal, Vaibhav., (2016) , Modeling of babesipain-1 and identification of natural and synthetic leads for bovine babesiosis drug development , Journal of molecular modeling, Springer,22,4,71.
21 Haque, Neshatul., Prabhu, N Prakash., (2016) , Lid dynamics of porcine pancreatic lipase in non-aqueous solvents General subjects , , ,,,.
20 Haque, Neshatul., Prabhu, N Prakash., (2016) , Lid dynamics of porcine pancreatic lipase in non-aqueous solvents , Biochimica et Biophysica Acta (BBA)-General Subjects, Elsevier,1860,10,2326-2334.
19 Meetei, Potshangbam Angamba., Rathore, R S., Prabhu, N Prakash., Vindal, Vaibhav., (2016) , In silico screening for identification of novel β-1, 3-glucan synthase inhibitors using pharmacophore and 3D-QSAR methodologies , Springerplus, Springer,5,1,965.
18 Mulukala, Sandeep Kumar Narasimha., Nishad, Rajkishor., Kolligundla, Lakshmi Prasanna., Saleem, Moin A., Prabhu, Nagu Prakash., Pasupulati, Anil Kumar., (2016) , In silico Structural characterization of podocin and assessment of nephrotic syndrome‐associated podocin mutants , IUBMB life, Wiley Online Library,68,7,578-588.
17 Haque, Neshatul., Prabhu, N Prakash., (2016) , Lid closure dynamics of porcine pancreatic lipase in aqueous solution , Biochimica et Biophysica Acta (BBA)-General Subjects, Elsevier,1860,10,2313-2325.
16 Kumar, E Kiran., Qumar, Shamsul., Prabhu, N Prakash., (2015) , Sodium dodecyl sulphate (SDS) induced changes in propensity and kinetics of α-lactalbumin fibrillation , International journal of biological macromolecules, Elsevier,81,,754-758.
15 Kumar, E Kiran., Prabhu, N Prakash., (2014) , Differential effects of ionic and non-ionic surfactants on lysozyme fibrillation , Physical Chemistry Chemical Physics, Royal Society of Chemistry,16,43,24076-24088.
14 Chaitanya, P Krishna., Prabhu, N Prakash., (2014) , Stability and Activity of Porcine Lipase Against Temperature and Chemical Denaturants , Applied biochemistry and biotechnology, Springer,174,8,2711-2724.
13 Haque, Neshatul., Prabhu, NP., (2014) , Insights into protein–TNS (2-p-toluidinylnaphthalene-6-sulfonate) interaction using molecular dynamics simulation , Journal of Molecular Structure, Elsevier,1068,,261-269.
12 Meetei, Potshangbam Angamba., Hauser, Alexander S., Raju, Prathigadapa S., Rathore, RS., Prabhu, N Prakash., Vindal, Vaibhav., (2014) , Investigations and design of pyridine-2-carboxylic acid thiazol-2-ylamide analogs as methionine aminopeptidase inhibitors using 3D-QSAR and molecular docking , Medicinal Chemistry Research, Springer,23,8,3861-3875.
11 Meetei, Potshangbam Angamba., Singh, Pankaj., Nongdam, Potshangbam., Prabhu, N Prakash., Rathore, RS., Vindal, Vaibhav., (2012) , NeMedPlant: a database of therapeutic applications and chemical constituents of medicinal plants from north-east region of India , Bioinformation, Biomedical Informatics Publishing Group,8,4,209.
10 Arun, PV Parvati Sai., Bakku, Ranjith Kumar., Subhashini, Mranu., Singh, Pankaj., Prabhu, N Prakash., Suzuki, Iwane., Prakash, Jogadhenu SS., (2012) , CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins , PloS one, Public Library of Science,7,11,e49425.
9 Tejaswi Naidu, K., Prakash Prabhu, N., (2011) , Protein–Surfactant Interaction: Sodium Dodecyl Sulfate-Induced Unfolding of Ribonuclease A , The Journal of Physical Chemistry B, ACS Publications,115,49,14760-14767.
8 Rao, D Krishna., Prabhu, N Prakash., Bhuyan, Abani K., (2006) , Extensive misfolding in the refolding reaction of alkaline ferrocytochrome c , Biochemistry, ACS Publications,45,27,8393-8401.
7 Prabhu, N Prakash., Bhuyan, Abani K., (2006) , Prediction of folding rates of small proteins: empirical relations based on length, secondary structure content, residue type, and stability , Biochemistry, ACS Publications,45,11,3805-3812.
6 Kumar, Rajesh., Prabhu, N Prakash., Rao, D Krishna., Bhuyan, Abani K., (2006) , The alkali molten globule state of horse ferricytochrome c: observation of cold denaturation , Journal of molecular biology, Elsevier,364,3,483-495.
5 Bhuyan, Abani K., Rao, D Krishna., Prabhu, N Prakash., (2005) , Protein folding in classical perspective: folding of horse cytochrome c , Biochemistry, ACS Publications,44,8,3034-3040.
4 Kumar, Rajesh., Prabhu, N Prakash., Bhuyan, Abani K., (2005) , Ultrafast events in the folding of ferrocytochrome c , Biochemistry, ACS Publications,44,26,9359-9367.
3 Prabhu, N Prakash., Kumar, Rajesh., Bhuyan, Abani K., (2004) , Folding barrier in horse cytochrome c: support for a classical folding pathway , Journal of molecular biology, Elsevier,337,1,195-208.
2 Kumar, Rajesh., Prabhu, N Prakash., Yadaiah, M., Bhuyan, Abani K., (2004) , Protein stiffening and entropic stabilization in the subdenaturing limit of guanidine hydrochloride , Biophysical journal, Elsevier,87,4,2656-2662.
1 Rao, Doddapuneni Krishna., Prabhu, N Prakash., Bhuyan, Abani K., (1977) , OFF-PATHWAY INTERMEDIATE (S) , NUCLEAR MAGNETIC RESONANCE (NMR), ,,,43.
Title Year Duration Amount(In Lakhs) PI/I
Host-virus interactions-DBT 2017 3 5200 Dr. M. Venkataramana/ Co PI- Dr. N. Prakash Prabhu, Department of Biotechnology and Bioinformatics