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Study Design and Data Analysis for Population Genomics: using ddRADseq and WGS

  • Event Link: https://forms.gle/CxGLVXxXjL8gvUsL7
  • Event Date: 25 Oct 2023 - 27 Oct 2023
  • Event Description: STUDY DESIGN AND DATA ANALYSIS FOR POPULATION GENOMICS: using ddRADseq and WGS

    IOE Sponsored Skill-Development Programme
    STUDY DESIGN AND DATA ANALYSIS FOR
    POPULATION GENOMICS: using ddRADseq and WGS
    25th to 27th October, 2023
    Venue: School of Life Sciences
    University of Hyderabad

    Course co-ordinator:
    Dr. Siddharthan S
    Topics covered:
    High-throughput sequencing, which NGS technique
    do you need?
    Introduction to UNIX command-line interface
    Experiment design for population genomics: ddRADseq
    ddRADseq library preparation (theory)
    Hands-on sessions: ddgRADer for ddRADseq
    Bioinformatic pipeline: de novo vs reference based
    Assessing data quality, trimmomatic, demultiplexing
    Aligning sequencing output to a reference and variant calling
    VCF filtering, Visualizing data: PCA, Fst, stairway plot

    Dr. Aparna Lajmi
    Institute of Evolution
    University of Haifa, Israe l
    Dr. M S Ram
    Centre for Ecological Sciences
    IISc, Bangalore, India
    Dr. Maitreya Sil
    School of Biological Sciences
    NISER, Bhubaneswar, India